This situation is easily remedied by regenerating the affected feature. This will cause the invisible feature's geometry to display correctly. The root cause of these features being created has been identified and fixed in Pro/ENGINEER Wildfire M240 and Wildfire 2.0 M100.
This fix does not identify existing models that contain features that may not be displaying on the model geometry. In order to help customers identify existing models with invisible feature geometry, we have developed tools to identify when this situation has occurred. Again, performing a forced regeneration of the model or any action that would cause these features to regenerate will correct the display issue.
For details about the issue and the tools PTC has created to ensure model integrity, please refer to TAN 128367
For details on using a tool created by PTC to automatically check a Pro/INTRALINK database of parts, please refer to TPI 128671.